跳至内容
售后
用户工具
登录
站点工具
搜索
工具
显示页面
修订记录
反向链接
最近更改
媒体管理器
网站地图
登录
>
最近更改
媒体管理器
网站地图
您的足迹:
qiime2去噪相关
编辑本页后请点击“保存”。请参阅
syntax
了解维基语法。只有在您能
改进
该页面的前提下才编辑它。如果您想尝试一些东西,请先到
playground
热身。
媒体文件
文库下机后,所有样本统一进行拆分、去除barcode和引物、拼接和初步质控,得到cleandata,将cleandata作为qiime2的输入文件。 dada2去噪时,由于输入序列没有barcode和引物,所以左端没有进行截取,--p-trim-left 默认是0,初步质控后双端拼接后的碱基质量值均很高,且拼接后的长度不确定,所以截取长度--p-trunc-len是0(不截取),其余均为dada2的默认参数 --p-max-ee Reads with number of expected errors higher than this value will be discarded. default: 2.0 --p-trunc-q Reads are truncated at the first instance of a quality score less than or equal to this value. If the resulting read is then shorter than `trunc-len`, it is discarded. default: 2 --p-pooling-method The method used to pool samples for denoising. "independent": Samples are denoised indpendently. "pseudo": The pseudo-pooling method is used to approximate pooling of samples. In short, samples are denoised independently once, ASVs detected in at least 2 samples are recorded, and samples are denoised independently a second time, but this time with prior knowledge of the recorded ASVs and thus higher sensitivity to those ASVs. default: 'independent' 其余参数可参考官网:https://docs.qiime2.org/2023.2/
保存
预览
取消
编辑摘要
当您选择开始编辑本页,即寓示你同意将你贡献的内容按下列许可协议发布:
CC Attribution-Share Alike 4.0 International
qiime2去噪相关.txt
· 最后更改: 2023/06/16 03:52 由
mengyanliang
页面工具
显示页面
修订记录
反向链接
回到顶部