====== 获取kegg映射数据库 ====== 获取kegg映射数据库,由于集群网络原因,建议科学上网,或者在上海集群运行 ====== 运行脚本 ====== #一行命令获取kegg映射数据库 #上海集群(time 5min) /SHPROJ1/META_ASS/script_Advanced_analysis/humann3/software/conda/envs/python3/bin/python /SHPROJ1/META_ASS/test_Advanced_analysis/kegg-database/kegg.py #天津集群(被禁止) /TJPROJ1/META_ASS/script_Advanced_analysis/HUMANn3/software/conda/envs/python3/bin/python /TJPROJ1/META_ASS/script_Advanced_analysis/kegg-pathway_level123/kegg.py ====== 获取文件 ====== KEGG_level_1-3.tsv pathway level3 level2 level1 ko00010 Glycolysis / Gluconeogenesis Carbohydrate metabolism Metabolism ko00020 Citrate cycle (TCA cycle) Carbohydrate metabolism Metabolism ko00030 Pentose phosphate pathway Carbohydrate metabolism Metabolism ko00040 Pentose and glucuronate interconversions Carbohydrate metabolism Metabolism KEGG_level_k-1.tsv ko00073 K13356 K13407 K15398 K15400 K15401 K15402 K15403 K15404 K15405 K15406 K17991 K20495 K20769 K21995 ko00100 K00213 K00222 K00223 K00227 K00511 K00559 K00637 K00801 K01052 K01824 K01852 K01853 K05917 K07419 K07436 K07438 K07748 K07750 K08242 K08246 K09 ko00120 K00037 K00251 K00488 K00489 K00659 K01442 K01796 K07430 K07431 K07439 K07440 K08748 K08764 K10214 K10223 K11992 K12405 K12408 ko00121 K00076 K01442 K07007 K15868 K15869 K15870 K15871 K15872 K15873 K15874 K22604 K22605 K22606 K22607 K23231