官网https://docs.antismash.secondarymetabolites.org/

运行步骤

source /TJPROJ6/RNA_SH/software/conda/conda/bin/activate antismash
antismash --cb-general --cb-knownclusters --cb-subclusters --asf --pfam2go --smcog-trees --genefinding-gff3 GCF_900183995.1_PD5205.1_genomic.gff GCF_900183995.1_PD5205.1_genomic.fna --output-dir  out
PS
  1. 用gff转的gtf也可以用作输入
  2. 官网https://docs.antismash.secondarymetabolites.org/
  3. 结果整理 /TJPROJ6/RNA_SH/personal_dir/wangjun/person_script/extract_result_from_antismash.py