基因组数据可视化
基因组数据可视化(深度,vaf值等数据)
1. 处理数据:
生成输入文件: /TJPROJ6/AFS_RESEQ/Proj/hanyue/03.CANCER/WGS.X101SC23041592-Z01-J001.gaoji_huitu_karkaryoploteR.20230615/03.Result_X101SC23041592-Z01-J001_cancer/result/Mutation/SNP/Vcf/Clone1.depth /TJPROJ6/AFS_RESEQ/Proj/hanyue/03.CANCER/WGS.X101SC23041592-Z01-J001.gaoji_huitu_karkaryoploteR.20230615/03.Result_X101SC23041592-Z01-J001_cancer/result/Mutation/SNP/Vcf/Clone1.vaf 运行脚本: <code> /TJPROJ6/AFS_RESEQ/Proj/miaojia/shell/conda/meme/bin/Rscript kar.R pdftoppm -png design.pdf design
图片: /TJPROJ6/AFS_RESEQ/Proj/hanyue/03.CANCER/WGS.X101SC23041592-Z01-J001.gaoji_huitu_karkaryoploteR.20230615/03.Result_X101SC23041592-Z01-J001_cancer/result/Mutation/SNP/Vcf/X101SC23041592-Z01-F002
示例路径: /TJPROJ6/AFS_RESEQ/Proj/hanyue/03.CANCER/WGS.X101SC23041592-Z01-J001.gaoji_huitu_karkaryoploteR.20230615/03.Result_X101SC23041592-Z01-J001_cancer/result/Mutation/SNP/Vcf/