统计bam中各个测序深度下位点个数及占比
/TJPROJ6/RNA_SH/personal_dir/zhangxin/jiaoben/jiajihua/get_depth.py
usage: get_depth.py [-h] [-B BAM] [-D DEPTH_FILE] [-S SAMPLE] [-N NOTICE]
[-F FAI] [-O OUT] [-T TMP]
get sample depth info
optional arguments:
-h, --help show this help message and exit
-B BAM, --bam BAM the bam file
-D DEPTH_FILE, --depth_file DEPTH_FILE
the depth file
-S SAMPLE, --sample SAMPLE
the sample name
-N NOTICE, --notice NOTICE
the depth list,split by ","
-F FAI, --fai FAI the fai file
-O OUT, --out OUT the out dir
-T TMP, --tmp TMP the tmp dir