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gsea分析

无参GSEA分析

#GO
python /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/scripts/noref_GSEA/noref_GSEA.py --type GO \
--compare femalevsmale,female_1vsmale_1 \
--condition /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/condition.xls \
--annot /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/Annotation_GO.xls \
--fpkm /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/gene_fpkm.xls \
--outfile /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/tttt \
--gmtfile /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/yyy

#KEGG
python /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/scripts/noref_GSEA/noref_GSEA.py --type KEGG \
--compare femalevsmale,female_1vsmale_1 \
--condition /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/condition.xls \
--annot /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/Annotation_KO.xls \
--fpkm /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/gene_fpkm.xls \
--outfile /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/tttt \
--gmtfile /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/yyy

#脚本位置
cd /TJPROJ6/RNA_SH/personal_dir/sunjiaxue/noref_test/log
gsea分析.txt · 最后更改: 2024/02/20 07:02 由 sunjiaxue