一些售后项目,由于前端交付原因,导致00.RawData中部分数据存在重复情况,老师无法上传NCBI,需要进行剔除,针对这一问题编写了这份小脚本,方便处理重复数据
**双端 fastq.gz 文件*
1.序列剔重
/TJPROJ5/META_ASS/script/yuxi/work/miniconda3/bin/python /TJPROJ5/META_ASS/script/yuxi/script/fqDelRepeatReads.py F*-1a_L1_AW71_1.fq.gz new_AW71_1.fq.gz /TJPROJ5/META_ASS/script/yuxi/work/miniconda3/bin/python /TJPROJ5/META_ASS/script/yuxi/script/fqDelRepeatReads.py F*-1a_L1_AW71_2.fq.gz new_AW71_2.fq.gz
2.序列校正排序
/TJPROJ5/META_ASS/script/yuxi/work/miniconda3/bin/python /TJPROJ5/META_ASS/script/yuxi/script/orderfq.py F*-1a_L1_AW71_1.fq.gz F*-1a_L1_AW71_2.fq.gz new_AW71_1.fq.gz /TJPROJ5/META_ASS/script/yuxi/work/miniconda3/bin/python /TJPROJ5/META_ASS/script/yuxi/script/orderfq.py F*-1a_L1_AW71_1.fq.gz F*-1a_L1_AW71_2.fq.gz new_AW71_2.fq.gz
示例路径:
/TJPROJ5/META_ASS/script/yuxi/script/fqDelRepeatReads