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tf注释

TF注释

脚本路径:

/TJPROJ6/RNA_SH/personal_dir/yangdan/new/gongdan/TF/TF.py

动植物转录因子数据库路径:

/TJPROJ6/RNA_SH/personal_dir/yangdan/new/gongdan/TF/AnimalTFDB3
/TJPROJ6/RNA_SH/personal_dir/yangdan/new/gongdan/TF/PlantTFDB

参数设置:

# 需要比对的fa
parser.add_argument('-F', '--fa', help='input fasta file', required=True) 

#可选折植物或动物转录因子注释数据库
parser.add_argument('-T', '--type', help='type of speceis Animal or Plant', required=True) 

# 输出结果路径
parser.add_argument('-O', '--outdir', help='output dir', required=True)

结果展示

gene_idspeciestf_familyprotein_familyscoreevalue
AVESA.00001b.r3.5Dg0002536Phyllostachys heterocyclaC3HC3H family protein674.9e-69
AVESA.00001b.r3.6Ag0003127Aegilops tauschiiWRKYWRKY family protein6735.8e-109
AVESA.00001b.r3.4Cg0000978Zoysia pacificTALETALE family protein3263.0e-29
AVESA.00001b.r3.4Dg0003041Oryza punctataNF-YBNF-YB family protein10135.8E-12
tf注释.txt · 最后更改: 2023/05/10 07:32 由 yangdan