wikipathways 官网:https://www.wikipathways.org/index.php/WikiPathways ; 下载数据网址 https://wikipathways-data.toolforge.org/ ; 参考博客网址 https://blog.csdn.net/weixin_43569478/article/details/108079039
如需富集可在下载数据页面获取gmt文件。
可使用R包查看物种,(/TJPROJ6/RNA_SH/personal_dir/zhangxin/miniconda/envs/R_3.6.0/bin/R),
library(rWikiPathways) listOrganisms()
查看该网站,目前网站中物种如下:
Acetobacterium woodii | Anopheles gambiae |
Arabidopsis thaliana | Bacillus subtilis |
Beta vulgaris | Brassica napus |
Bos taurus | Caenorhabditis elegans |
Canis familiaris | Clostridium thermocellum |
Danio rerio | Daphnia magna |
Daphnia pulex | Drosophila melanogaster |
Escherichia coli | Equus caballus |
Gallus gallus | Glycine max |
Gibberella zeae | Homo sapiens |
Hordeum vulgare | Mus musculus |
Mycobacterium tuberculosis | Oryza sativa |
Ovis aries | Pan troglodytes |
Populus trichocarpa | Rattus norvegicus |
Saccharomyces cerevisiae | Solanum lycopersicum |
Sus scrofa | Vitis vinifera |
Xenopus tropicalis | Zea mays |
Plasmodium falciparum |