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wikipathways测试记录

wikipathways

wikipathways 官网:https://www.wikipathways.org/index.php/WikiPathways ; 下载数据网址 https://wikipathways-data.toolforge.org/ ; 参考博客网址 https://blog.csdn.net/weixin_43569478/article/details/108079039

如需富集可在下载数据页面获取gmt文件。

可使用R包查看物种,(/TJPROJ6/RNA_SH/personal_dir/zhangxin/miniconda/envs/R_3.6.0/bin/R),

  library(rWikiPathways)
  listOrganisms()

查看该网站,目前网站中物种如下:

Acetobacterium woodii Anopheles gambiae
Arabidopsis thaliana Bacillus subtilis
Beta vulgaris Brassica napus
Bos taurus Caenorhabditis elegans
Canis familiaris Clostridium thermocellum
Danio rerio Daphnia magna
Daphnia pulex Drosophila melanogaster
Escherichia coli Equus caballus
Gallus gallus Glycine max
Gibberella zeae Homo sapiens
Hordeum vulgare Mus musculus
Mycobacterium tuberculosis Oryza sativa
Ovis aries Pan troglodytes
Populus trichocarpa Rattus norvegicus
Saccharomyces cerevisiae Solanum lycopersicum
Sus scrofa Vitis vinifera
Xenopus tropicalis Zea mays
Plasmodium falciparum
wikipathways测试记录.txt · 最后更改: 2022/05/13 07:33 由 zhangxin